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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35583450_35588457_R

Intron Information:

Intron Rank:
134396
Intron Class:
major
Intron Phase:
Intron Coordinates:
35583450 - 35588457
Intron Length:
5008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTTCCCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.4
37.9
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
63.6
0.31
1
58.7
34.7
Minor 5ss
43.4
-0.7
2.9
58.5
45.8
Minor BPS
50.4
0.09
2.1
80.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048312
35582086 - 35588932
6847