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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35595335_35606631_R

Intron Information:

Intron Rank:
140225
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
35595335 - 35606631
Intron Length:
11297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
AAAATGCCATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.1
0.09
1.1
49.4
43.8
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
53.9
0.2
1.7
71.8
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022819
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036527
35595030 - 35607301
12272