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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35606734_35607237_R

Intron Information:

Intron Rank:
140222
Intron Class:
major
Intron Phase:
Intron Coordinates:
35606734 - 35607237
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TTTGCTTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.5
31.6
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
75.1
0.57
1
72.7
37.6
Minor 5ss
31.6
-2.1
3.2
38.8
46.5
Minor BPS
70
0.62
1.3
77.53
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022819
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046347
35606316 - 35611303
4988
ENSAPLT00000036527
35595030 - 35607301
12272
ENSAPLT00000022286
35606316 - 35611364
5049