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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35609639_35609767_R

Intron Information:

Intron Rank:
140227
Intron Class:
major
Intron Phase:
Intron Coordinates:
35609639 - 35609767
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022819
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037358
35609246 - 35611468
2223