About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35609888_35611127_R

Intron Information:

Intron Rank:
140228
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
35609888 - 35611127
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
AATAAATTCATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TACTCAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
59.6
0.22
1
51.3
41.8
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
55.9
0.26
1.9
75.54
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022819
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037358
35609246 - 35611468
2223