About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35618246_35618443_F

Intron Information:

Intron Rank:
145147
Intron Class:
major
Intron Phase:
Intron Coordinates:
35618246 - 35618443
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.7
0.78
0.8
81.7
34.8
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
62
0.46
1.9
81.65
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028275
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046415
35618232 - 35619575
1344