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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35634525_35638664_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35634525 - 35638664
Intron Length:
4140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
TTCTCTTTCAGC
Flanking Amino Acid:
TEKPQQTEVQEQKGERKEAR
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
80.5
0.69
0.8
77.7
29.5
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
54.7
0.13
2.1
69.26
43

Associated Gene:

Gene:
CCDC149
Ensembl Gene ID:
ENSAPLG00000010671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037800
35632538 - 35680171
47634