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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35638773_35642533_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35638773 - 35642533
Intron Length:
3761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TTGATTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AACACTTTGATT
Flanking Amino Acid:
LSYNVSVGFGSGKDTITFSD
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
66.1
40.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.6
0.67
1
77
41.9
Minor 5ss
42.7
-0.8
3.1
55.2
43.1
Minor BPS
57.7
0.32
1.3
66.38
38.6

Associated Gene:

Gene:
CCDC149
Ensembl Gene ID:
ENSAPLG00000010671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037800
35632538 - 35680171
47634