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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35672037_35680123_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35672037 - 35680123
Intron Length:
8087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTATTTTATTT
Flanking Amino Acid:
ESDWQGLVSEYLVCKRKLES
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.79
0.7
80.1
25.2
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
CCDC149
Ensembl Gene ID:
ENSAPLG00000010671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037800
35632538 - 35680171
47634
ENSAPLT00000011128
35633938 - 35680171
46234