Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35707413_35707673_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35707413 - 35707673

Intron Length:

261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTACGATGA

5'SS Class:

major

3'SS Sequence:

TAATCCTCTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TCCCATTTAATC

Flanking Amino Acid:

AQLFGGSHIYNRSQVPIILQ

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

62.6

38.8

Major BPS

90.7

1.01

0.7

19.9

Major PPT

71.9

0.49

0.9

63.3

38.9

Minor 5ss

37.9

-1.4

3.3

46.9

46.5

Minor BPS

54.9

0.13

1.5

60.1

39.7

Associated Gene:

Gene:

LGI2

Ensembl Gene ID:

ENSAPLG00000019636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021297

35706262 - 35713543

7282