Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35707765_35709429_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35707765 - 35709429

Intron Length:

1665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACACGAA

5'SS Class:

major

3'SS Sequence:

CTTTGGGCAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

ACTGTGCTAATA

Flanking Amino Acid:

MNFRSYDNITGQSIVGCKAI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

38.7

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

60.3

0.23

54.6

40.3

Minor 5ss

33.9

-1.8

3.6

46.3

Minor BPS

42.3

-0.5

2.2

53.12

Associated Gene:

Gene:

LGI2

Ensembl Gene ID:

ENSAPLG00000019636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021297

35706262 - 35713543

7282

ENSAPLT00000024902

35706262 - 35723071

16810