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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35713608_35714701_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35713608 - 35714701
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACCTTTTCAAAT
Flanking Amino Acid:
VFSDLDSLIELDLRGNKFEC
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.7
0.73
0.8
81.2
36.5
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
49.3
0.03
1.6
62.87
41.7

Associated Gene:

Gene:
LGI2
Ensembl Gene ID:
ENSAPLG00000019636
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024902
35706262 - 35723071
16810