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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35732520_35745895_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35732520 - 35745895
Intron Length:
13376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TGATTCAGAATT
Flanking Amino Acid:
MLFTRQVSGASACQSITPAS
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
76.2
0.65
1
67
39.8
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
51.9
0.14
1.7
71.5
39.1

Associated Gene:

Gene:
SEPSECS
Ensembl Gene ID:
ENSAPLG00000009962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010389
35732108 - 35766316
34209