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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35744215_35745895_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35744215 - 35745895
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GCATCTTTAACT
Flanking Amino Acid:
MLFTRQVSGARVVPCGTVQT
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
86.1
0.81
0.9
84.6
36
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
76.7
0.92
1.2
81.48
40.1

Associated Gene:

Gene:
SEPSECS
Ensembl Gene ID:
ENSAPLG00000009962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041841
35741935 - 35766316
24382