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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35755428_35755554_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35755428 - 35755554
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTAAATTTAATC
Flanking Amino Acid:
FIQEISKMYPGRASASPSLD
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
55.2
0.14
1.5
61.91
37.1

Associated Gene:

Gene:
SEPSECS
Ensembl Gene ID:
ENSAPLG00000009962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041841
35741935 - 35766316
24382
ENSAPLT00000010389
35732108 - 35766316
34209