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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35757284_35761307_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35757284 - 35761307
Intron Length:
4024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATACTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTCTAAATT
Flanking Amino Acid:
TSCFAPRVPDRLEELAVICA
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.6
0.67
0.9
73.4
36
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
67.3
0.62
1.6
84.73
36.1

Associated Gene:

Gene:
SEPSECS
Ensembl Gene ID:
ENSAPLG00000009962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041841
35741935 - 35766316
24382
ENSAPLT00000010389
35732108 - 35766316
34209