About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35780140_35781354_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35780140 - 35781354
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TACCTACATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTACCTACATT
Flanking Amino Acid:
PFKHPDEWRAYPFHWAWLPQ
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
66.3
0.37
0.9
63.6
37.1
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
54.8
0.23
2.1
80.31
42.1

Associated Gene:

Gene:
PI4K2B
Ensembl Gene ID:
ENSAPLG00000009723
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010152
35769329 - 35785075
15747