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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35781489_35782591_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35781489 - 35782591
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTAACAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
LCEDLHELFKTDKGFDKATF
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63.5
0.3
1.1
64.7
39.7
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
PI4K2B
Ensembl Gene ID:
ENSAPLG00000009723
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010152
35769329 - 35785075
15747