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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35782652_35784901_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35782652 - 35784901
Intron Length:
2250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
GTGCCCTCACCT
Flanking Amino Acid:
ENQMSVMRGQILNLTQALKD
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
83.5
0.75
0.7
81.8
30
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
51.6
0.13
1.9
70.76
45.5

Associated Gene:

Gene:
PI4K2B
Ensembl Gene ID:
ENSAPLG00000009723
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010152
35769329 - 35785075
15747