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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35788066_35789372_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35788066 - 35789372
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
ATAAATTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTTGTAACT
Flanking Amino Acid:
CNFFQWEDEKLSEARLAARE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.3
0.53
1
65.5
44.4
Minor 5ss
35.7
-1.6
3.3
45.9
49.3
Minor BPS
63.2
0.49
2
83.79
37.4

Associated Gene:

Gene:
ZCCHC4
Ensembl Gene ID:
ENSAPLG00000009717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010114
35787693 - 35798526
10834