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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35790978_35791274_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35790978 - 35791274
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTGTTACT
Flanking Amino Acid:
VRSLLLDIDFRYSQFYTEDA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.8
77
36.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
60.2
0.4
2.3
87.77
37.8

Associated Gene:

Gene:
ZCCHC4
Ensembl Gene ID:
ENSAPLG00000009717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010114
35787693 - 35798526
10834