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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35791348_35792365_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35791348 - 35792365
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTTTAGAAAT
Flanking Amino Acid:
MFNHYFFGGEAVHETCRKFL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.1
0.81
0.7
80.3
31.1
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
49.4
0.03
1.8
73.31
37

Associated Gene:

Gene:
ZCCHC4
Ensembl Gene ID:
ENSAPLG00000009717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010114
35787693 - 35798526
10834