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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35794489_35795108_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35794489 - 35795108
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
ACCTTTTTACCA
Flanking Amino Acid:
MIVLPVEEGYRFCVICQRYV
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
76.1
0.59
0.9
69.8
39.7
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
53.9
0.12
1.6
60.09
40.8

Associated Gene:

Gene:
ZCCHC4
Ensembl Gene ID:
ENSAPLG00000009717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010114
35787693 - 35798526
10834