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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35795740_35796468_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35795740 - 35796468
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ACTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TAATACTGAATC
Flanking Amino Acid:
CSLCKKCVKPSWFHCNKCNC
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
82.8
0.74
0.9
76.8
36.7
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
58.2
0.24
1.6
66.99
37.8

Associated Gene:

Gene:
ZCCHC4
Ensembl Gene ID:
ENSAPLG00000009717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010114
35787693 - 35798526
10834