About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35799091_35800361_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35799091 - 35800361
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CCTGTCTTAAAT
Flanking Amino Acid:
LIALANRAGEVLLHRLANFQ
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
79.3
0.66
0.9
73.7
36.9
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
61
0.42
1.6
72.05
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016667
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036890
35798983 - 35807981
8999