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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35800468_35801059_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35800468 - 35801059
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
CGTCCTTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATACAT
Flanking Amino Acid:
TALAWRPDGKILAFGLTDTK
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
67.5
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77
0.61
0.8
69
37
Minor 5ss
37.8
-1.4
3.3
46.6
43.4
Minor BPS
47.6
-0.1
1.9
70.4
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016667
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036890
35798983 - 35807981
8999