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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35802712_35802961_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35802712 - 35802961
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTTTGTATTT
Flanking Amino Acid:
LLPKLPALPKNEEKSDEIMK
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
48.2
-0
2.2
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016667
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036890
35798983 - 35807981
8999