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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35856477_35862261_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35856477 - 35862261
Intron Length:
5785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
ATATATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
CTTTGCTCAACA
Flanking Amino Acid:
MHLKGCSGCPVDPF
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
74.3
0.55
1
67.3
42.6
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
61.1
0.35
2
75.44
42.2

Associated Gene:

Gene:
SLC34A2
Ensembl Gene ID:
ENSAPLG00000008254
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008624
35856464 - 35879565
23102