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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35862318_35867837_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35862318 - 35867837
Intron Length:
5520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTACTTTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACATTTTAATC
Flanking Amino Acid:
FALLPGKKEVSQIMAPWPEV
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.7
0.58
1
74.3
40
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
61.1
0.33
1.3
63.25
36.7

Associated Gene:

Gene:
SLC34A2
Ensembl Gene ID:
ENSAPLG00000008254
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041879
35837862 - 35879565
41704
ENSAPLT00000031956
35861335 - 35879565
18231
ENSAPLT00000019146
35861335 - 35879565
18231
ENSAPLT00000008624
35856464 - 35879565
23102