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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35868920_35869826_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35868920 - 35869826
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATGTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
ACTTCCCTCACT
Flanking Amino Acid:
VLSSAFQLVGGKAAGDIFKD
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
68.7
0.46
1
71.3
34
Major PPT
83.4
0.75
0.8
77.5
36.5
Minor 5ss
38
-1.4
3.1
50.1
46.4
Minor BPS
58
0.33
2.1
79.02
43

Associated Gene:

Gene:
SLC34A2
Ensembl Gene ID:
ENSAPLG00000008254
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031956
35861335 - 35879565
18231
ENSAPLT00000019146
35861335 - 35879565
18231
ENSAPLT00000008624
35856464 - 35879565
23102
ENSAPLT00000041879
35837862 - 35879565
41704