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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35869971_35870561_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35869971 - 35870561
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTCTACTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCAAT
Flanking Amino Acid:
SIVVSMVSSTLLTVQSAIPI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
81
0.7
0.8
73.5
36.7
Minor 5ss
39.2
-1.2
3
49.6
39.9
Minor BPS
60.1
0.4
2.2
86.72
38.6

Associated Gene:

Gene:
SLC34A2
Ensembl Gene ID:
ENSAPLG00000008254
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031956
35861335 - 35879565
18231
ENSAPLT00000019146
35861335 - 35879565
18231
ENSAPLT00000008624
35856464 - 35879565
23102
ENSAPLT00000041879
35837862 - 35879565
41704