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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35874765_35875470_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35874765 - 35875470
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
ACTAGGCCAATT
Flanking Amino Acid:
NVSETDYISKCRHLFAESDL
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
54
0.1
1
59.7
32.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
34.4
-1.1
2.4
51.75
43

Associated Gene:

Gene:
SLC34A2
Ensembl Gene ID:
ENSAPLG00000008254
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008624
35856464 - 35879565
23102
ENSAPLT00000041879
35837862 - 35879565
41704
ENSAPLT00000031956
35861335 - 35879565
18231
ENSAPLT00000019146
35861335 - 35879565
18231