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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35875639_35877013_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35875639 - 35877013
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAAGA
Flanking Amino Acid:
ASVIKKTINTDFPFPFTWLA
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76
33
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
36.2
-1.6
2.7
42.7
38.5
Minor BPS
57.2
0.22
2
71.36
41.1

Associated Gene:

Gene:
SLC34A2
Ensembl Gene ID:
ENSAPLG00000008254
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019146
35861335 - 35879565
18231
ENSAPLT00000008624
35856464 - 35879565
23102
ENSAPLT00000041879
35837862 - 35879565
41704
ENSAPLT00000031956
35861335 - 35879565
18231