About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35877131_35877218_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35877131 - 35877218
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CATTCTGCAATC
Flanking Amino Acid:
VFTSAITPLVGIGVISIERS
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
79
0.65
0.7
72.8
32.1
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
46.7
-0.2
2.1
59.12
40.7

Associated Gene:

Gene:
SLC34A2
Ensembl Gene ID:
ENSAPLG00000008254
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041879
35837862 - 35879565
41704
ENSAPLT00000031956
35861335 - 35879565
18231
ENSAPLT00000019146
35861335 - 35879565
18231
ENSAPLT00000008624
35856464 - 35879565
23102