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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35935769_35938603_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35935769 - 35938603
Intron Length:
2835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCCAGAGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCAGAGAA
Flanking Amino Acid:
FRPLLLPDEYKQSINRAGIV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
51.1
0.03
1.2
52.9
40.1
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
48.9
-0
2
71.28
40

Associated Gene:

Gene:
SMIM20
Ensembl Gene ID:
ENSAPLG00000026829
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033642
35935660 - 35939977
4318