Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35938655_35939939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35938655 - 35939939

Intron Length:

1285

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATACTCG

5'SS Class:

major

3'SS Sequence:

ATTTGGTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

TACTTATGAACT

Flanking Amino Acid:

GIVQEDIQPPGLKVWSDPFG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.1

58.3

41.5

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

75.9

0.58

0.9

69.3

41.3

Minor 5ss

49.6

-0

2.5

65.3

46.1

Minor BPS

57.2

0.3

1.7

75.1

41.2

Associated Gene:

Gene:

SMIM20

Ensembl Gene ID:

ENSAPLG00000026829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033642

35935660 - 35939977

4318