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Intron Name: Anas_platyrhynchos_platyrhynchos_4_35947062_36069639_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

35947062 - 36069639

Intron Length:

122578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAAATT

5'SS Class:

major

3'SS Sequence:

CTTCTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTGTTTTAAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

78.1

36.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

92.7

0.96

0.6

91.6

19.6

Minor 5ss

37.7

-1.4

3.4

57.7

46.5

Minor BPS

66.8

0.61

1.6

82.67

39.4

Associated Gene:

Gene:

RBPJ

Ensembl Gene ID:

ENSAPLG00000007512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017182

35946940 - 36092637

145698