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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3595041_3596396_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3595041 - 3596396
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGCTTT
5'SS Class:
major
3'SS Sequence:
TTTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCTTTTTCATT
Flanking Amino Acid:
AWPGGPNQHFTYHVIVIVLV
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.3
78.8
38.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.5
0.91
0.7
85.9
26.9
Minor 5ss
54.2
0.14
2.7
72.8
37.2
Minor BPS
54.6
0.23
1.7
71.21
40.9

Associated Gene:

Gene:
TACR3
Ensembl Gene ID:
ENSAPLG00000008661
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009013
3578151 - 3612853
34703