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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35951214_36069639_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35951214 - 36069639
Intron Length:
118426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACT
Flanking Amino Acid:
MFSSWKFGERPQPK
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
66.8
0.61
1.6
82.67
39.4

Associated Gene:

Gene:
RBPJ
Ensembl Gene ID:
ENSAPLG00000007512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007822
35951200 - 36092637
141438