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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3596586_3612401_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3596586 - 3612401
Intron Length:
15816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCCTATGACT
Flanking Amino Acid:
IYSMTAIAVDRYMAIIDPLK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
91.9
0.94
0.6
87.1
23.5
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
65.7
0.58
1.6
85.93
33.5

Associated Gene:

Gene:
TACR3
Ensembl Gene ID:
ENSAPLG00000008661
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009013
3578151 - 3612853
34703