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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36058546_36060058_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36058546 - 36060058
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
GTATTTATGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATGT
Flanking Amino Acid:
TLKPRSCKASALFEMVPEVY
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.2
0.48
1.1
70.5
44.2
Minor 5ss
35
-1.7
3.4
46
49.3
Minor BPS
49.3
0.03
2
72.27
44.9

Associated Gene:

Gene:
RBPJ
Ensembl Gene ID:
ENSAPLG00000007512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026258
36058443 - 36092637
34195