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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36059961_36060058_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36059961 - 36060058
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
GTATTTATGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATGT
Flanking Amino Acid:
MKAALFEMVPEVY
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.2
0.48
1.1
70.5
44.2
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
49.3
0.03
2
72.27
44.9

Associated Gene:

Gene:
RBPJ
Ensembl Gene ID:
ENSAPLG00000007512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045640
36059478 - 36092637
33160