About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36060234_36069639_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36060234 - 36069639
Intron Length:
9406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACT
Flanking Amino Acid:
VRGCWHSPWSRKFGERPQPK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.8
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
33.3
-1.9
3.4
49
47.2
Minor BPS
66.8
0.61
1.6
82.67
39.4

Associated Gene:

Gene:
RBPJ
Ensembl Gene ID:
ENSAPLG00000007512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041412
36060052 - 36092637
32586
ENSAPLT00000026258
36058443 - 36092637
34195
ENSAPLT00000019953
36060052 - 36092637
32586
ENSAPLT00000045640
36059478 - 36092637
33160