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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36063308_36069639_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36063308 - 36069639
Intron Length:
6332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACT
Flanking Amino Acid:
MKFGERPQPK
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
85
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
40.5
-1.1
2.8
58
39.1
Minor BPS
66.8
0.61
1.6
82.67
39.4

Associated Gene:

Gene:
RBPJ
Ensembl Gene ID:
ENSAPLG00000007512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019381
36063131 - 36092637
29507