Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36082202 - 36083308

Intron Length:

1107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAAGTG

5'SS Class:

major

3'SS Sequence:

TTTTTACCTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

ATGTTTTTACCT

Flanking Amino Acid:

EMQQLNLEGKNYCTAKTLYI

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

63.2

41.7

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

87.6

0.85

0.7

81.8

29.1

Minor 5ss

-2.1

3.8

46.1

49.1

Minor BPS

62.9

0.48

1.6

77.17

Associated Gene:

Gene:

RBPJ

Ensembl Gene ID:

ENSAPLG00000007512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018053

35953926 - 36092637

138712

ENSAPLT00000026258

36058443 - 36092637

34195

ENSAPLT00000017182

35946940 - 36092637

145698

ENSAPLT00000019953

36060052 - 36092637

32586

ENSAPLT00000047343

36015212 - 36092637

77426

ENSAPLT00000007822

35951200 - 36092637

141438

ENSAPLT00000019381

36063131 - 36092637

29507

ENSAPLT00000045640

36059478 - 36092637

33160

ENSAPLT00000018639

35960786 - 36092637

131852

ENSAPLT00000041412