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Intron Name: Anas_platyrhynchos_platyrhynchos_4_36085117_36085350_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36085117 - 36085350

Intron Length:

234

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

CTGTTTCATGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TAATGTGGAACT

Flanking Amino Acid:

QQWGAFYIHLLDDDESEGEE

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

76.6

33.9

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

78.4

0.64

0.9

73.7

35.9

Minor 5ss

-1.4

2.8

52.2

44.4

Minor BPS

44.3

-0.3

2.4

66.69

43.9

Associated Gene:

Gene:

RBPJ

Ensembl Gene ID:

ENSAPLG00000007512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018053

35953926 - 36092637

138712

ENSAPLT00000026258

36058443 - 36092637

34195

ENSAPLT00000017182

35946940 - 36092637

145698

ENSAPLT00000019953

36060052 - 36092637

32586

ENSAPLT00000047343

36015212 - 36092637

77426

ENSAPLT00000007822

35951200 - 36092637

141438

ENSAPLT00000019381

36063131 - 36092637

29507

ENSAPLT00000018639

35960786 - 36092637

131852

ENSAPLT00000045640

36059478 - 36092637

33160