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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36085464_36087673_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36085464 - 36087673
Intron Length:
2210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACAGTTC
5'SS Class:
major
3'SS Sequence:
ATTTCATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTCCTAAACA
Flanking Amino Acid:
SVTGMALPRLIIRKVDKQTA
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.1
60.1
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.8
73.3
35.5
Minor 5ss
39.7
-1.2
3.6
55.2
44.7
Minor BPS
75.3
0.79
1.6
83.14
38

Associated Gene:

Gene:
RBPJ
Ensembl Gene ID:
ENSAPLG00000007512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047343
36015212 - 36092637
77426
ENSAPLT00000007822
35951200 - 36092637
141438
ENSAPLT00000019381
36063131 - 36092637
29507
ENSAPLT00000045640
36059478 - 36092637
33160
ENSAPLT00000018639
35960786 - 36092637
131852
ENSAPLT00000018053
35953926 - 36092637
138712
ENSAPLT00000041412
36060052 - 36092637
32586
ENSAPLT00000017182
35946940 - 36092637
145698
ENSAPLT00000026258
36058443 - 36092637
34195