Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36087815_36091291_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36087815 - 36091291

Intron Length:

3477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

AGTTTTCAAACT

Flanking Amino Acid:

LSQERIIQFQATPCPKEPNK

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

0.8

86.7

22.9

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

77.1

0.61

82.4

26.6

Minor 5ss

42.4

-0.8

58.5

40.4

Minor BPS

1.9

71.15

39.9

Associated Gene:

Gene:

RBPJ

Ensembl Gene ID:

ENSAPLG00000007512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017182

35946940 - 36092637

145698

ENSAPLT00000026258

36058443 - 36092637

34195

ENSAPLT00000007822

35951200 - 36092637

141438

ENSAPLT00000019381

36063131 - 36092637

29507

ENSAPLT00000047343

36015212 - 36092637

77426

ENSAPLT00000018639

35960786 - 36092637

131852

ENSAPLT00000045640

36059478 - 36092637

33160

ENSAPLT00000018053

35953926 - 36092637

138712

ENSAPLT00000041412

36060052 - 36092637

32586