Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36091448 - 36092126

Intron Length:

679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

ACCCCCAATCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TTCTGCTCACCC

Flanking Amino Acid:

TPVPVVESLQLNGGGDVAML

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

26.3

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

61.8

0.27

51.5

36.4

Minor 5ss

36.1

-1.6

3.3

49.4

41.3

Minor BPS

48.3

-0.1

2.2

66.26

45.6

Associated Gene:

Gene:

RBPJ

Ensembl Gene ID:

ENSAPLG00000007512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017182

35946940 - 36092637

145698

ENSAPLT00000019953

36060052 - 36092637

32586

ENSAPLT00000047343

36015212 - 36092637

77426

ENSAPLT00000007822

35951200 - 36092637

141438

ENSAPLT00000019381

36063131 - 36092637

29507

ENSAPLT00000045640

36059478 - 36092637

33160

ENSAPLT00000018639

35960786 - 36092637

131852

ENSAPLT00000041412

36060052 - 36092637

32586

ENSAPLT00000018053

35953926 - 36092637

138712

ENSAPLT00000026258

36058443 - 36092637

34195

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36091448_36092126_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: