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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36092382_36092450_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36092382 - 36092450
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCCG
5'SS Class:
major
3'SS Sequence:
TTTACTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TGGTCCGTAACG
Flanking Amino Acid:
PDISAFREGWSLTFTYTPEP
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
62.3
43.9
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
74.8
0.56
0.9
67.7
38.8
Minor 5ss
27.7
-2.6
2.9
32.5
42.3
Minor BPS
60.6
0.19
2.1
68.02
45.3

Associated Gene:

Gene:
RBPJ
Ensembl Gene ID:
ENSAPLG00000007512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045640
36059478 - 36092637
33160